Data source and references for cicer arietinum chick pea. Its yield remains affected by biotic and abiotic stresses. Chickpea plants can be described as stems are branched, erect or spreading, sometimes. It is believed to be derived from the the wild species c. The following databases on web pages not maintained by ildis may contain information on cicer arietinum. The website also provides access to a database and images of plants photos and herbarium specimens found at participating herbaria. Pdf molecular analysis of chickpea cicer arietinum l.
The chickpea or chick pea cicer arietinum is an annual legume of the family fabaceae, subfamily faboideae. Cgwr is an online database offering a comprehensive visual and. Chickpea was domesticated in the fertile crescent of the. The first group includes the cultivated chickpea cicer arietinum l. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.
Most of these processes are initiated or mediated through auxinregulated gene expression, which in turn is controlled by proteins belonging three gene families. Untreated cells react weakly, and only in the presence of high. However, drought poses a serious threat to chickpea production, and development of droughtresistant varieties is a necessity. Apr 27, 2018 the plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. Draft genome sequence of chickpea cicer arietinum provides a resource for trait improvement. Cicer arietinum and medicago truncatula are common legumes and model plants that have been used to study legume genomics wang et al. The staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume. Genomewide identification and expression analysis of the vq. Its cultivation is of particular importance to food security in the developing world.
Jan 27, 20 the staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume. Users can select the specific blast program and database. Cicer arietinum chickpea is a legume and belongs to the fabaceae family. The alabama plant atlas is a source of data for the distribution of plants within the state as well as taxonomic, conservation, invasive, and wetland information for each species. Transcriptome sequencing of chickpea cicer arietinum l.
Genomewide identification and expression analysis of two. Using sanger and next generation sequencing platforms. Chickpea was domesticated in the fertile crescent of the middle east, together with other pulses as well as wheat and barley. Comprehensive functional analysis and mapping of ssr markers in the chickpea genome cicer arietinum l. The emergence of epidemic fungal pathogenic resistance to current antifungal drugs has increased the interest in developing alternative antibiotics from natural sources.
Mass spectrometry data were processed to generate peak list files using proteome discoverer software version 2. All structured data from the file and property namespaces is available under the. Crystal structure of a plant albumin from cicer arietinum showing hemagglutination. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists. Chickpea cicer arietinum is one of the worlds three most consumed pulses the other two are phaseolus vulgaris and pisum sativum. However, vq genes have not been comprehensively evaluated in c. Files are available under licenses specified on their description page.
However, drought poses a serious threat to chickpea production, and development of drought. The name of the release, important dates, the software version. Genomewide analysis and expression profiling of the solanum tuberosum aquaporins. The species is hermaphrodite has both male and female organs. Genomewide identification of the auxin response factor. Ctdb is an online repository that hosts transcriptome datasets with functional annotation from cultivated and wild chickpea. Permits researchers to display transcriptome data in chickpea.
Untreated cells react weakly, and only in the presence of high concentrations of bsa. An advanced draft genome assembly of a desi type chickpea. All structured data from the file and property namespaces is available under the creative commons cc0 license. Full publication details for this name can be found in ipni. This page was last edited on 12 november 2017, at 07. Sharpe, bunyamin taran, rong li, benjamin deonovic, connor cameron, andrew d. Genomewide analysis of the aquaporin gene family in chickpea. The data were searched against ncbi cicer arietinum proteome database updated december 12, 2012, containing 33,000 protein sequences. Chickpea cicer arietinum, is an important legume crop in the semiarid tropics and ranks third in total yield among seed legume crops globally, after soybean and common bean. Native americans and hispanics historically ate the beans green and dried. The chickpea cicer arietinum is a legume species in the group of. Genomewide identification and expression analysis of two component system genes in cicer arietinum author links open overlay panel bilal ahmad a 1 farrukh azeem a 1 muhammad amjad ali b c muhammad amjad nawaz d habibullah nadeem a amjad abbas b riffat batool e rana muhammad atif f g usman ijaz a manuel nievescordones h gyuhwa chung i. The refseq genome records for cicer arietinum were annotated by the ncbi.
The current release of database provides transcriptome sequence from cultivated cicer arietinum desi icc4958 and kabuli iccv2 and wild cicer reticulatum, pi489777 chickpea genotypes. This initiative was undertaken by our group for the. An cicer arietinum in nahilalakip ha genus nga cicer, ngan familia nga fabaceae. Antifungal and antiproliferative protein from cicer. We developed an integrated chickpea transcriptome database ctdb. If you use one of these buttons, you may have to use your browsers back button to return to this page.
The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates. Comprehensive transcriptome assembly of chickpea cicer arietinum l. In this study, a comprehensive genomewide analysis. It has been reported that the use of cicer arietinum helps in diabetes and cardiovascular diseases and in some cancers. Chickpea plants can be described as stems are branched, erect or spreading, sometimes shrubby much branched, 0. Network grin, usda, ars, national genetic resources program. Genomewide analysis of the aquaporin gene family in. For computation of chains of syntenic regions, dagchainer software. The record derives from ildis which reports it as an accepted name record 4318. Comprehensive transcriptome assembly of chickpea cicer.
The annotation products are available in the sequence databases and on the ftp. General information about cicer 1cieg this website uses cookies our website uses cookies to ensure that we give you the best possible online experience. The record derives from ildis which reports it as an. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo. Cicer arietinum annotation report national center for. It is in flower from june to july, and the seeds ripen from august to september. Genomewide identification and expression analysis of two component system genes in cicer arietinum author links open overlay panel bilal ahmad a 1 farrukh azeem a 1 muhammad amjad ali b c.
Aquaporins aqps are essential membrane proteins that play critical role in the transport of water and many other solutes across cell membranes. Genomewide identification of the auxin response factor gene. Delicious in soups and stews or perfect for making your own hummus. Unfortunately, cultivated chickpea has a high morphological but narrow genetic diversity, and understanding the genetic processes of this plant is hindered by the fact that the chickpea. The plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. Datenblatt bei international legume database information service ildis.
Chickpea cicer arietinum is a widely grown legume crop in tropical, subtropical. We previously reported a draft genome assembly of the desi chickpea cultivar icc 4958. Chickpeas, or garbanzo beans, are an old word legume that was introduced to the southwest by the spanish. Most of these processes are initiated or mediated through auxin. Cicer arietinum synonyms, cicer arietinum antonyms. General information about cicer arietinum ciear eppo global database. The chickpea transcriptome database ctdb has been developed with the view to provide most comprehensive information about the chickpea transcriptome, the most relevant part of the genome. As a member of the wwpdb, the rcsb pdb curates and annotates pdb data according to agreed upon standards. Valineglutamine vq proteins are plantspecific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. In this study, we identified 19 and 32 vq genes in c. The increasing number of legume genome sequences also presents a challenge for developing reliable and informationdriven bioinformatics applications suitable for. Cicer arietinum is not known as a wild plant but is believed to have originated in the central part of the fertile crescent in modern turkey, syria and iran. Chickpea cicer arietinum is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food.
Antifungal and antiproliferative protein from cicer arietinum. Some lectins having hemagglutination activity were isolated earlier from cicer arietinum. The rcsb pdb also provides a variety of tools and resources. The major goals of chickpea breeding are to increase production either by upgrading the genetic potential of cultivars or by eliminating the effect of diseases, insects, drought and cold. Its cultivation is of particular importance to food security in the developing world where. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo bean, egyptian pea, chana, and chole. Molecular analysis of chickpea cicer arietinum l cultivars using aflp and stms markers article pdf available in journal of plant biochemistry and biotechnology 172. A lectin isolated from the seed of the chick pea, cicer arietinum, agglutinates papain treated human erythrocytes strongly. Dec 18, 2014 availability of the draft nuclear genome sequences of smallseeded desitype legume crop cicer arietinum has provided an opportunity for investigating unique chickpea genomic features and evaluation of their biological significance. We constructed cicertransdb cicer transcription factor database. The current release of database provides transcriptome sequence from cultivated cicer arietinum desi icc4958 and kabuli iccv2 and wild.
Cicer arietinum icc4958, clustering, comparative genomics, genome browser, mapping background the draft genome sequence of the economically important pulse crop cicer arietinum l. Genomewide identification and expression analysis of the. Data source and references for cicer arietinum chick pea from the usda plants database. The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. Article pdf available in computational biology and chemistry 84.
810 172 1152 1273 860 809 67 630 743 557 1261 425 740 1252 276 50 189 1337 657 514 518 1097 310 346 1530 1266 843 788 341 887 616 352 981 1442 1380 229 700 599 749 1381 901